Overview
BioEvidence is the productized, local-first continuation of my TREC BioGen work. It turns biomedical questions into evidence-linked answers while keeping model inference local and the retrieval trail visible. Its Examples mode also provides a detailed view of the TREC system's questions, retrieved evidence, answers, and citations.
System design
- Pyserini/Lucene retrieval over a 14.9M-record PubMed index
- Adaptive reranking and evidence selection
- Local LLM generation with on-device inference
- Citation validation for generated answers
- Live integrations with PubMed/NCBI, Europe PMC, and ClinicalTrials.gov
- Detailed TREC BioGen examples for inspecting the full question-to-citation path
What was built
- Real-time query-to-citation pipeline spanning PubMed, Europe PMC, and ClinicalTrials.gov
- User-facing Next.js application for live answers and saved TREC example inspection
- Local-first inference path designed for privacy and control
Result
The TREC research pipeline and its evaluation artifacts now connect directly to a practical AI application with inspectable evidence and direct links to biomedical sources.